Oregon State University

FY 2012 All CIMRS

*Bolded names are CIMRS authors.

FY 2012

Auth, T.D.  2011. Analysis of the spring-fall epipelagic ichthyoplankton community in the northern California Current in 2004-2009 and its relation to environmental factors. CalCOFI Reports 52:148-167.

Auth, T. D., R.D. Brodeur, H.L. Soulen, L. Ciannelli, W.T. Peterson. 2011.  The response of fish larvae to decadal changes in environmental forcing factors off the Oregon coast.  Fisheries Oceanogr. 20(4): 314-328. DOI: 10.1111/j.1365-2419.2011.00586.x

Baker, E.T., W.W. Chadwick, Jr., J.P. Cowen, R.P. Dziak, K.H. Rubin and D.J. Fornari.  2012. Hydrothermal discharge during submarine eruptions: The important of detection, response, and new technology.  Oceanography 25(1): 128-141. DOI: 10.5670/oceanog.2012.11

Baldwin R.E., M.A. Banks, and K.C. Jacobson2012. Integrating fish and parasite data as a holistic solution for identifying the elusive stock structure of Pacific sardines (Sardinops sagax) Reviews in Fish Biology and Fisheries 22(1):137-156.

Baldwin, R. E., M. Rew, M.L.  Johansson, M. A. Banks, K.C. Jacobson. 2011. Population! structure of three species! of Anisakis nematodes recovered from Pacific sardines (Sardinops sagax) distributed throughout the California Current System.  J.  Parasitology 97 (4): 545-554. DOI:10.1645/GE-2690.

Bjorkstedt, E., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, B. Peterson, B. Emmett, R. Brodeur, J. PetersonM. Litz, J. Gomez-Valdez, G. Gaxiola-Castro, B. Lavaniegos, F. Chavez, C.A. Collins, J. Field, K. Sakuma, P. Warzybok, R. Bradley, J. Jahncke, S. Bograd, F. Schwing, G. S. Campbell, J. Hildebrand, W. Sydeman, S. A. Thompson, J. Largier, C. Halle, S. Y. Kim, J. Abell. State of the California Current 2010-2011: regionally variable response to a strong (but fleeting?) La Niña. CalCOFI Rep. 52:36-68

Black, B. A., R.J. Allman, I.D. Schroeder, M.J. Schirripa, 2011.  Multidecadal otolith! growth histories for red and gray snapper  (Lutjanus spp.).  Fish. Oceanogr.  20 (5): 347-356. DOI: 10.1111/j.1365-2419.2011.00588.x2011.  

Brodeur, R.D. , T.D. Auth, T. Britt, E.A. Daly, M.N.C. Litz, and R.L. Emmett. 2011. Dynamics of larval and juvenile rockfish (Sebastes spp.) recruitment in coastal waters of the Northern California Current. ICES CM 2011/H:12.

Chadwick, W. W., Jr., R. P. Dziak, J. H. Haxel, R. W. Embley, and H. Matsumoto. 2012.  Submarine landslide triggered by volcanic eruption recorded by in-situ hydrophone!.  Geology 40(1): 51-54. DOI: 10.1130/G32495.1

Chadwick, W.W., Jr., S. Jonsson, D.J. Geist, M. Poland, D.J. Johnson, S.  Batt, K.S. Harpp, A.  Ruiz. 2011.  The May 2005 eruption of Fernandina volcano, Galapagos: The first circumferential dike intrusion observed by GPS and InSAR. Bulletin of Volcanology 73 (6): 679-697 DOI: 10.1007/s00445-010-0433-0.

Clague, D., J. Paduan, D. W. Caress, H. Thomas, W.W.Chadwick Jr., and S. G. Merle. 2011, Volcanic morphology of West Mata Volcano, NE Lau Basin, based on high-resolution bathymetry and depth changes, Geochem. Geophys. Geosyst., 12(11) QOAF03, doi:10.1029/2011GC003791

Claiborne, A., Fisher, J.P., Hayes, S.A., Emmett, R. L. 2011. Size at release, size selective mortality, and age of maturity of Willamette River hatchery yearling Chinook salmon. Transactions of the American Fisheries Society 140(4):1135-1144. DOI:10.1080/00028487.2011.607050

Copeman, L.A., A.W. Stoner, M.L. Ottmar, B. Daly, C.C. Parrish, and G.L. Eckert. 2012. Total lipids, lipid classes, and fatty acids of newly settled red king crab (Paralithodes camtschaticus): Comparison of hatchery-cultured and wild crabs. J. Shellfish Research, 31(1):153-165. DOI: 10.2983/035.031.0119

Daly E.A., R.D. Brodeur, J.P. Fisher, L.A. Weitkamp., D.J. Teel, and B.R. Beckman. (2012) Spatial and trophic overlap of marked and unmarked Columbia River Basin spring Chinook salmon during early marine residence with implications for competition between hatchery and naturally produced fish. Env Biol Fishes94(1):117-134. DOI: 10.1007/s10641-011-9857-4

de Ronde, C. E. J. G.J. Massoth,  D.A. Butterfield, B.W. Christenson, J. Ishibashi, R.G. Ditchburn, M.D. Hannington, R.L. Brathwaite, J.E. Lupton, John E. V.S. Kamenetsky, I.J. Graham, G.F. Zellmer, R.P. Dziak, R.W. Embley, V.M. Dekov, F. Munnik, J.  Lahr,   L.J. Evans, K. Takai. 2011.  Submarine hydrothermal activity and gold-rich mineralization at Brothers Volcano, Kermadec Arc, New Zealand.  Mineralium Deposita 46 (5-6): 541-584 DOI: 10.1007/s00126-011-0345.

Du, X., W. Peterson, and A. McCulloch.  2011.  An unusual bloom! of the dinoflagellate Akashiwo sanguine off the central  Oregon, USA, coast in autumn 2009. Harmful Algae 10(6).  DOI:10.1016/j.hal.2011.06.011.

Dziak, R.P., D.R. Bohnenstiehl, and D.K. Smith.  2012. Hydroacoustic monitoring of oceanic spreading centers: Past, present and future.  Oceanography 25(1): 116-127.  DOI: 10.5670/oceanog.2012.10

Dziak, R.P., S.R. Hammond, and C.G. Fox (2011): A 20-year hydroacoustic time series of seismic and volcanic events in the northeast Pacific Ocean.Oceanography24(3), doi: 10.5670/oceanog.2011.79, 280–293.

Gómez-Gutiérrez, J., M. C. Strüder-Kypke, D. H. Lynn, T. C. Shaw, M. J. Aguilar-Méndez, A. López-Cortés, S. Martínez-Gómez, C. J. Robinson.  2012.  Pseudocollinia brintoni gen. nov., sp. nov. (Apostomatida: Colliniidae), a parasitoid ciliate infecting the euphausiid Nyctiphanes simplex.  Dis. Aquat. Org. 99:57-78.  doi: 10.3354/dao02450.

Goslin, J., J. Perrot, J.-Y. Royer, C. Martin, N. Lourenco, J. Luis, R.P. Dziak, H. Matsumoto, J. HaxelM.J. Fowler, C.G. Fox, A. T.-K. Lau, and S. Bazin. 2012. Spatiotemporal distribution of the seismicity along the Mid-Atlantic Ridge north of the Azores from hydroacoustic data: Insights into seismogenic processes in a ridge-hot spot context.  Geochemistry Geophysics Geosystems 13(2): Q02010. DOI:10.1029/2011GC003828.

Harvey, H.R., R.L. Pleuthner, E.J. Lessard, M.J. Bernhardt,and C.T. Shaw.  2012.  Physical and biochemical properties of the euphausiids Thysanoessa inermis,Thysanoessa raschii, and Thysanoessa longipes in the eastern Bering Sea.  Deep-Sea Res. II 65-70:173-183.  doi:10.1016/j.dsr2.2012.02.007.

Jacobson K.C. and R.E. Baldwin and D. Reese. 2012. Parasite communities indicate effects of cross-shelf distributions, but not mesoscale oceanographic features on northern California Current mid-trophic food web.  Marine Ecology Progress Series 454:19-36. doi: 10.3354/meps09654

Johansson, M., E. Duda, A. Sremba, M. Banks, and W. Peterson. 2012. Assessing population-level variation in the mitochondrial genome of Euphausia superba using 454 next-generation sequencing. Molecular Biology Reports, 39(5): 5755-5760. DOI: 10.1007/s11033-011-1385-y

Keister, J. E. E. Di Lorenzo, C.A. Morgan, V. Combes, W.T. Peterson. 2011.  Zooplankton! species composition is linked to ocean transport in the Northern California Current.  Global Change Biology 17 (7): 2498-2511. DOI: 10.1111/j.1365-2486.2010.02383.x

Klinck H., D.K. Mellinger, K. Klinck, N.M. Bogue, J.C. Luby, W.A. Jump, G.B. Shilling, T. Litchendorf, A.S. Wood, G.S. Schorr, R.W. Baird. (2012) Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider™. PLoS ONE 7(5): e36128. doi:10.1371/journal.pone.0036128

Litz, M., A.J., Phillips, R.L. Emmett, and R. Brodeur. 2011. Seasonal occurrences of humboldt squid (Dosidicus gigas) in the Northern California current system. Calif. Coop. Oceanic Fish. Invest. Rep. 52: 97-108.  

Lupton, J.E., R.J. Arculus, J. Resing, G.J. Massoth, R.R. GreeneL.J. Evans, and  N. Buck. 2012. Hydrothermal activity in the Northwest Lau Backarc Basin: Evidence from water-column measurements. Geochemistry Geophysics Geosystems 13:Q0AF04.  DOI:10.1029/2011GC003891

Lupton, J.E., R.J. Arculus, L.J. Evans, and D.W. Graham. 2012. Mantle hotspot neon in basalts from the Northwest Lau Back-arc Basin. Geophyiscal Research Letters39: L08308. DOI: 10.1029/2012GL051201

Marques, T.A., L. Thomas, S.W. Martin, D.K. Mellinger, S. Jarvis, R.P. Morrissey, C.-A. Ciminello, and N. DiMarzio. 2012. Spatially explicit capture-recapture methods to estimate minke whale density from data collected at bottom-mounted hydrophones. J Ornithol. 152 (Suppl 2):S445–S455. DOI: 10.1007/s10336-010-0535-7

Nieukirk, S.L., D.K. Mellinger, S.E. Moore, K.Klinck, R.P. Dziak and J. Goslin. 2012.  Sounds from airguns and fin whales recorded in the mid-Atlantic Ocean, 1999-2009.  JASA 131(2): DOI: 10.1121/1.3672648.

Pool, Suzan S., D.C. Reese,  and R.D. Brodeur. 2012. Defining marine habitat of juvenile Chinook salmon, Oncorhynchus tshawytscha, and coho salmon, O. kisutch, in the northern California Current System. Environ. Biol. of Fishes, 93 (2):233-243. DOI: 10.1007/s10641-011-9909-9 FEB 2012.

Resing, J. A., K.H. Rubin, R.W. Embley, J.E. Lupton, E.T. Baker,  R. P. Dziak, T. Baumberger, M.D. Lilley, J.A. Huber, T.M. Shank, D.A. Butterfield, D.A. Clague, N.S. Keller, S.G. Merle, N.J. Buck, P.J. Michael, A. Soule, D.W. Caress, S.L. Walker, R.Davis, J.P. Cowen, A. Reysenbach and H. Thomas. 2011. Active submarine eruption of boninite in the northeastern Lau Basin.  Nature Geoscience 4(11): 1-19.  DOI: 10.1038/NGEO1275

Rubin, K.H., S.A. Soule, W.W. Chadwick, Jr., D.J. Fornari, D.A. Clague, R.W. Embley, E.T. Baker, M.R. Perfit, D.W. Caress, and R.P. Dziak. 2012. Volcanic eruptions in the deep sea.  Oceanography 25(1): 142-157. DOI: 10.5670/oceanog.2012.12

Rupp, D. E., T. C. Wainwright, P. W. Lawson, and W. T. Peterson. 2011. Marine environment-based forecasting of coho salmon (Oncorhynchus kisutch) adult recruitment. Fisheries Oceanography 21 (1):1-19. DOI: 10.1111/j.1365-2419.2011.00605.x2012.

Rupp, D. E., T. C. Wainwright, and P. W. Lawson. 2012. Effect of forecast skill on management of the Oregon Coast coho salmon (Oncorhynchus kisutch) fishery.Canadian Journal of Fisheries and Aquatic Sciences 69:1016-1032. doi:10.1139/F2012-040

Ruzicka, J. J., T. C. Wainwright, and W. T. Peterson. 2011. A model-based meso-zooplankton production index and its relation to the ocean survival of juvenile coho (Oncorhynchus kisutch). Fisheries Oceanography 20(6): 544-559. DOI: 10.1111/j.1365-2419.2011.00601.x

Steele, J. H. and J.J. Ruzicka. 2011. Constructing end-to-end models using ECOPATH data. 2011.  J.  Marine Sys. 87 (3-4): 227-238. DOI: 10.1016/j.jmarsys.2011.04.005  [September, 2011]

Suchman, C.L., Brodeur, R.D., Daly, E.A. and Emmett, R.L. (2012). Large medusae in surface waters of the Northern California Current: variability in relation to environmental conditions. Hydrobiologia. 690:113–125.

Weitkamp L.A., E.A. Daly, and J.P. Fisher. (2012) Early marine residence of juvenile pink and chum salmon in the Northern California current: life at the southern end of the range. NPAFC Tech Rep, 8: 54-57

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