Schedule for BB 450/550 Classroom for Fall Term, 2014

Time HERE

This is the page for the CLASSROOM version of BB 450/550. The ECAMPUS version is different and should not be used by CLASSROOM students, nor should the CLASSROOM version be used by ECAMPUS students) The syllabus is required reading in this course. Download it HERE. Please note that this course uses an optional FREE textbook called "Biochemistry Free and Easy" that I co-wrote with Indira Rajagopal. Version 2.0 has been released and you can get it HERE

You can get my courses on iTunesU HERE. We will sing numerous songs during the term. You can see and download recordings of them HERE.
You can also lot a LOT of my other free materials HERE.

TA Office Hours HERE

Date
Topic
Page Numbers
Relevant Problems

September 29
Outline HERE

Figures can be downloaded in Blackboard

1. Introduction/Acids & Bases
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) 3-24

Stryer (7) 1-24

Biochemistry Free and Easy (v. 2.0) - 10-23

plus HERE and HERE


Stryer (6) - Ch 1: 1, 6,8,9,10,11,12

Stryer (7) Ch 1: 1, 6,12,14,16,17.18
All problems in this column are optional and do not need to be turned in.

Problem Set #1 HERE
Problem Set #2 HERE

October 1

2. Acids & Base
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 3-24

Stryer (7) 3-24

Biochemistry Free and Easy (v. 2.0) - 10-23

plus HERE and HERE

Problem Solving Videos for buffers/proteins HERE and HERE

Transparency Scans HERE and HERE

October 3
Outline HERE

Figures can be downloaded in Blackboard

3. Amino Acids
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 25-64

Stryer (7) 25-64

Biochemistry Free and Easy (v. 2.0) - 41-53


Stryer (6) - Ch 2: 2,3,6,8

Stryer (7) Ch 2: 2,3,4,18

October 6

4. Protein Structure I
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

(Note that the camera chip failed on the lecture, so the video here is a spliced version of an older video. It may not have everything in it covered i the highlights)

Stryer (6th edition) - 25-64

Stryer (7) 25-64

Biochemistry Free and Easy (v. 2.0) - 41-53


October 8

5. Protein Structure II
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 25-64

Stryer (7) 25-64

Biochemistry Free and Easy (v. 2.0) - 41-53

A.A./Protein Charge
Problem Solving Video HERE
Transparencies HERE
October 10
Outline HERE
Figures can be downloaded in Blackboard

6. Protein Characterization I
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 65-106

Stryer (7) 65-108

Biochemistry Free and Easy (v. 2.0) - 212-224

Stryer (6) - Ch. 3: 1,5,10,13,18

Stryer (7) - Ch. 3: 1,9,11,19

Practice Protein Charge Problems HERE

Withdrawals after the end of the second week of classes cannot occur after Friday of that week. See OSU Academic Regulations HERE

I do not approve petitions for dropping, withdrawal, or pass/no pass grading after any of the deadlines have passed, unless there are extraordinarily unusual circumstances. To drop a class completely (no grade), you must do so by Friday of the 2nd week of class. To withdraw from a class, you must do so no later than Friday of the 7th week.

It is your responsibility to understand the drop policy in the link above. I do not approve retroactive withdrawals from the course due to not reading the policy above.

 

 
October 13
7. Protein Characterization II
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Foxtrot HERE

Stryer (6th edition) - 65-106

Stryer (7) 65-108

Biochemistry Free and Easy (v. 2.0) - 212-224

A.A./Protein Charge
Problem Solving Video HERE
Transparencies HERE

October 15
Outline HERE
Figures can be downloaded in Blackboard

8. Hemoglobin
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 183-204

Stryer (7) 195-218

Biochemistry Free and Easy (v. 2.0) - 53-56

Stryer (6) - Ch. 7: 3,5,

Stryer (7) Ch. 7: 9,13,14a,15

October 17
Outline HERE
Figures can be downloaded in Blackboard

9. Enzymes I
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song #1 HERE
Song #2 HERE

Stryer (6th edition) 205-240

Stryer (7) 219-252

Biochemistry Free and Easy (v. 2.0) - 80-96

Stryer (6) - Ch. 8, 2ab, 4ab,

Stryer (7) - Ch. 8: 4,5,7,12,13,18,20

October 20

10. Enzymes II
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) 205-240

Stryer (7) 219-252

Biochemistry Free and Easy (v. 2.0) - 80-96

October 22

11. Enzymes III
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) 205-240

Stryer (7) 219-252

Biochemistry Free and Easy (v. 2.0) - 80-96

October 24

Sample Exam HERE

Review Session HERE

Today's Limerick HERE

Exam I

Exam I

 

Grade Distribution HERE

Exam I

October 27

Outline HERE
Figures can be downloaded in Blackboard

12. Catalytic Strategies IHighlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 241-260

Stryer (7) 253-288

Biochemistry Free and Easy (v. 2.0) - 80-96

Stryer (6) - Ch. 9: 2,4,5,12b,13

Stryer (7) - Ch. 9: 7,11,13,17

October 29
13. Catalytic Strategies II
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 241-260

Stryer (7) 253-288

Biochemistry Free and Easy (v. 2.0) - 80-96


October 31
Outline HERE
Figures can be downloaded in Blackboard

14. Allostery and Regulation I

Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 275-302

Stryer (7) 289-317

Biochemistry Free and Easy (v. 2.0) - 96-100

Stryer (6) - Ch. 10 #1,4, 5, 17

Stryer (7) - Ch. 10: 3,4,5,14,18,23,27


November 3

15. Allostery and Regulation II
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE / Video HERE

Stryer (6th edition) - 275-302

Stryer (7) 289-317

Biochemistry Free and Easy (v. 2.0) - 96-100

November 5
Outline HERE
Figures can be downloaded in Blackboard
Notes HERE

16. Carbohydrates I
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 303-325

Stryer (7) 319-344

Biochemistry Free and Easy (v. 2.0) - 64-71

Stryer (6) - Ch. 11 #3, 5, 11, 12

Stryer (7) - Ch. 11: 3,4,7,17

November 7

17. Carbohydrates II / Cellular Signaling I
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Songs HERE and HERE

Stryer (6th edition) - 381-408

Stryer (7) 401-426

Biochemistry Free and Easy (v. 2.0) - 195-211

Stryer (6) - Ch. 14 #1, 3, 4

Stryer (7) - Ch. 14: 1,2,3,5,7,8,14

November 10
Outline HERE
Figures can be downloaded in Blackboard
Notes HERE

18. Cellular Signaling II
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 381-408

Stryer (7) 401-426

Biochemistry Free and Easy (v. 2.0) - 195-211

November 12
Outline HERE
Figures can be downloaded in Blackboard
Notes HERE

19. Signaling III / Metabolic Control I
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE


Stryer (6th edition) - 409-432

Stryer (7) 427-451

Biochemistry Free and Easy (v. 2.0) - 25-39, 141-144

Stryer (6) - Ch. 15 # 1, 3, 8, 9, 10

Stryer (7) Ch. 15: 1,2,4,7,8,9,10,17,19,22,25,28

Problem Set #3 HERE

November 14

20. Metabolic Control II
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE
Music Video HERE

Stryer (6th edition) - 409-432

Stryer (7) 427-451

Biochemistry Free and Easy (v. 2.0) - 25-39, 141-144

Gibbs Free Energy Video HERE

Transparencies HERE

November 17
Outline HERE
Figures can be downloaded in Blackboard
Notes HERE

21. Glycolysis I
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

End of Material For Exam 2


Stryer (6th edition) - 433-464

Stryer (7) 453-496

Biochemistry Free and Easy (v. 2.0) - 144-150

November 19

22. Glycolysis II
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 433-464

Stryer (7) 453-496

Biochemistry Free and Easy (v. 2.0) - 144-150


November 21

Review Session HERE

Exam II

Exam II

Grades for scores of Exam 1 + 2 HERE

Exam II
November 24
23. Glycolysis III / Gluconeogenesis
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 433-464

Stryer (7) 453-496

Biochemistry Free and Easy (v. 2.0) - 150-153

November 26

24. Sugar Metabolism Regulation
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 592-616

Stryer (7) 615-638

Biochemistry Free and Easy (v. 2.0) - 173-179

December 1
Outline HERE
Figures can be downloaded in Blackboard
Notes HERE

25. Glycogen Metabolism I
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 592-616

Stryer (7) 615-638

Biochemistry Free and Easy (v. 2.0) - 173-179

December 3
26. Glycogen Metabolism II
Highlights HERE
YouTube Video HERE
Today's Limerick HERE
Song HERE

Stryer (6th edition) - 592-616

Stryer (7) 615-638

Biochemistry Free and Easy (v. 2.0) - 173-179

December 5

27. Glycogen Metabolism III / Finishing Up

Highlights HERE
YouTube Video HERE
Today's Limericks HERE/ HERE / HERE
Songs HERE / HERE / HERE / HERE
Music Video HERE

All the Metabolic Melodies HERE

Metabolic Melodies Book HERE

Metabolic Melodies 2015 Calendar HERE

Limerick Book HERE

Review Session Video HERE

Stryer (6th edition) - 592-616

Stryer (7) 615-638

Biochemistry Free and Easy (v. 2.0) - 173-179

December 11 6:00 p.m.

Comprehensive Final Exam

Comprehensive Final Exam

Comprehensive Final Exam