Oregon State University

FY 2013 All CIMRS

*Bolded names are CIMRS authors.

FY 2013

Au, W.W.L., Giorli, G., Chen, A., Copeland, A., Lammers, M., Richlen, M., Jarvis, S., Morrissey, R., Moretti, D., & Klinck, H. (2013). Nighttime foraging by deep diving echolocating odontocetes off the Hawaiian islands of Kauai and Ni’ihau as determined by passive acoustic monitors. J. Acoust. Soc. Am., 133(5): 3119-3127. [http://dx.doi.org/10.1121/1.4798360]

Bi, H, W.T. Peterson, J.O. Peterson, and J.L. Fisher (2012) A comparative analysis of coastal and shelf-slope copepod communities in the northern California Current system: Synchronized response to large scale forcing? Limnol. Oceanogr. 57(5): 1467-1478. doi:10.4319/lo.2012.57.5.1467  

Bohnenstiehl, D. R., R. P. Dziak, H. Matsumoto, T-K Lau. 2013. Underwater acoustic records from the March 2009 eruption of Hunga Ha’apai – Hunga Tonga volcano in the Kingdom of Tonga, J. Vol & Geoth. Res. 249(1): 12-24.  http://dx.doi.org/10.1016/j.jvolgeores.2012.08.014 

Burke, B.J., Peterson, W.T., Beckman, B.R., Morgan, C., Daly, E.A., Litz, M. (2013) Multivariate models of adult Pacific salmon returns. PLoS ONE 8(1): e54134 doi:10.1371/journal.pone.0054134

Caress, D.W., Clague, D.A., Paduan, J.B., Martin, J.F., Dreyer, B.M., Chadwick, Jr., W.W., Denny, A., & Kelley, D.S. (2012). Repeat bathymetric surveys at 1-metre resolution of lava flows erupted at Axial Seamount in April 2011. Nature Geoscience, 5(7):483-488. doi: 10.1038/NGEO1496

Chadwick, W.W., Jr., Nooner, S.L., Butterfield, D.A., & Lilley, M.D. (2012). Seafloor deformation and forecasts of the April 2011 eruption at Axial Seamount. Nature geoscience, 5(7):474-477. doi: 10.1038/NGEO1464

Claxton, A., Jacobson, K. C., Bhuthimethee, M., Teel, D., & Bottom, D. 2013. Parasites in subyearling Chinook salmon (Oncorhynchus tshawytscha) suggest increased habitat use in wetlands compared to sandy beach habitats in the Columbia River estuary. Hydrobiologia, 1-13. DOI 10.1007/s10750-013-1564-z 

Daly, E.A., Auth, T.D., Brodeur, R.D., and Peterson, W.T. 2013. Winter ichthyoplankton biomass as a predictor of early summer prey fields and survival of juvenile salmon in the northern California Current. Mar. Ecol. Progr. Ser., 484: 203-217. doi: 10.3354/meps10320  

Deschamps, A., Tivey, M. A., Chadwick, Jr., W. W., & Embley, R. W. (2013). Waning magmatic activity along the Southern Explorer Ridge revealed through fault restoration of rift topography. Geochemistry, Geophysics, Geosystems, 14(5), 1609 – 1625. doi:10.1002/ggge.20110

Dziak, R.P., Baker, E.T., Shaw, A.M., Chadwick, Jr., W.W., Haxel, J.H., Matsumoto, H., & Walker, S.L. (2012). Flux measurements of explosive degassing using a yearlong hydroacoustic record at an erupting submarine volcano. Geochemistry, Geophysics, Geosystems, 13(11), Q0AF07. doi:10.1029/2012GC004211.

Dziak, R.P., Fowler, M., Matsumoto, H., Bohnenstiehl, D.R., Park, M., Warren, K., & Lee, W-S. (2013). Life and death sounds of iceberg A53a. Oceanography, 26(2). http://dx.doi.org/10.5670/oceanog.2013.20.

Dziak, R.P., Haxel, J.H., Bohnenstiehl, D.R., Chadwick, Jr., W.W., Nooner, S.L., Fowler, M.J., Matsumoto, H. & Butterfield, D.A. (2012). Seismic precursors and magma ascent before the April 2011 eruption at Axial Seamount. Nature Geoscience, 5(7):478-482. doi: 10.1038/NGEO1490

Embley, R.W., C.E.J. deRonde, S.G. Merle, B. Davy, and F. Caratori Tontini (2012): Detailed morphology and structure of an active submarine arc caldera: Brothers Volcano, Kermadec Arc. Econ. Geol., 107, doi: 10.2113/econgeo.107.8.1557, 1557–1570.  

Francis, T.B., M.D. Scheuerell, R.D. Brodeur, P.S. Levin, J.J. Ruzicka, N. Tolimieri and W.T. Peterson.  2012. Climate shifts the interaction web of a marine plankton community.  Global Change Biology, 18(8): 2498-2508. doi: 10.1111/j.1365-2486.2012.02702.x.

Haxel, J.H., R.P. Dziak, and Haru Matsumoto. 2013.  Observations of shallow water marine ambient sound: The low frequency underwater soundscape of the central Oregon Coast.  J. Acoust.Soc.Amer. 133(5): 2586-2596. http://dx.doi.org/10.1121/1.4796132      

Johansson, M.L., A.L. Sremba, L.R.Feinberg, M.A. Banks and W. T. Peterson. 2012.  The mitochondrial genomes of Euphausia pacifica and Thysanoessa raschi sequenced using 454 next-generation sequencing with a phylogenetic analysis of their position in the Malacostracan family tree.  Molecular Biology Reports, 39(9): 9009-9021. DOI 10.1007/s11033-012-1772-z

Klinck, H., S. Nieukirk, D. K. Mellinger, K. Klinck, H. Matsumoto, and R.P. Dziak. 2012. Seasonal presence of cetaceans and ambient noise levels in polar waters of the North Atlantic. J. of Acoust. Soc. Am., EL181, 132(3). DOI:10.1121/1.4740226

Klinck, H., M. Horning, M., D.K. Mellinger, D.P Costa, S. Fregosi, D.A. Mann, K. Sexton, and L. Huckstadt. 2012. Animal-borne active acoustic tags: A new paradigm to conduct minimally invasive behavioral response studies? J. Acoust. Soc. Amer. 132(3): 2009-.

Laurel, B.J., L.A. Copeman, and C.C. Parrish. 2012.  Role of temperature on lipid/fatty acid composition in Pacific cod (Gadus macrocephalus) eggs and unfed larvae.  Marine Biology, 159(9): 2025-2034. DOI: 10.1007/s00227-012-1989-3

Leybourne, M. I., U. Schwartz-Schampera, C. E. J. De Ronde, E. T. Baker, K. Faure, S. L. Walker, D. A. Butterfield, J. A. Resing, J. E. Lupton, M. D. Hannington, H. L. Gibson, G. J. Massoth, R. W. Embley, W. W. Chadwick, Jr., M. R. Clark, C. Timm, I. J. Graham, and I. C. Wright. 2012.. Submarine magmatic-hydrothermal systems at the Monowai Volcanic Center, Kermadec Arc.  Economic Geology, 107(8): 1669–1694. doi:10.2113/econgeo.107.8.1669.  

Litz, M. N. C., Emmett, R. L., Bentley, P. J., Claiborne, A. M., & Barcelo, C. (2013). Biotic and abiotic factors influencing forage fish and pelagic! nekton! community in the Columbia River plume (USA) throughout the upwelling! season 1999–2009. ICES Journal of Marine Science. doi:10.1093/icesjms/fst082 

Marques, T.A., Thomas, L., Martin, S.W., Mellinger, D.K., Ward, J.A., Moretti, D.J., Harris, D., & Tyack, P.L. (2013). Estimating animal population! density using passive acoustics. Biol. Rev., 88: 287–309.  doi: 10.1111/brv.12001

Martin, S. W., Marques, T. A., Thomas, L., Morrissey, R. P. , Jarvis, S., DiMarzio, N., Moretti, D., and Mellinger, D. K. (2013). Estimating minke whale (Balaenoptera acutorostrata) boing sound density using passive acoustic sensors. Marine Mammal Science, 29(1):142-158.

Matsumoto, H., C. Jones, H. Klinck, D. K. Mellinger, R. P. Dziak, and C. Meinig. 2012. Tracking beaked whales with a passive acoustic profiler float.  J. Acoust. Soc. Am. 133(2): 731-740.  doi: 10.1121/1.4773260    

Miller J.A., D.J. Teel, A. Baptista, C.A. Morgan. 2013. Disentangling bottom-up and top-down effects on survival during early ocean residence in a population of Chinook salmon (Oncorhynchus tshawytscha). Can J Fish Aquat Sci 70(4):617-629

Roegner, G.C., E.A. Daly, and R.D. Brodeur. 2013. Surface distribution of brachyuran megalopae and ichthyoplankton in the Columbia River plume during transition from downwelling to upwelling conditions. Continental Shelf! Research 60:70-86.

Rogers, T. L., Ciaglia, M. B., Klinck, H., & Southwell, C. (2013). Density can be misleading for low-density species!: benefits of Passive Acoustic Monitoring. PLoS ONE 8(1): e52542. doi:10.1371/journal.pone.0052542

Ruzicka, J.J., Brodeur, R. D., Emmett, R. L., J.H. Steele, J.E. Zamon, C.A. Morgan,  A.C. Thomas, and T.C. Wainwright. 2012. Interannual variability in the Northern California Current food web structure: changes in energy flow pathways and the role of forage fish, euphausiids, and jellyfish. Progress in Oceanography, 102: 19-41.  http://dx.doi.org/10.1016/j.pocean.2012.02.002

Stoner, A., Copeman, L.A., & Ottmar, M.L. (2013). Molting, growth, and energetics of newly-settled blue king crab: Effects of temperature and comparisons with red king crab. Journal of Experimental Marine Biology and Ecology, 442: 10 – 21. http://dx.doi.org/10.1016/j.jembe.2013.02.002      

Suchman C.L., R.D. Brodeur, E.A. Daly and R.L. Emmett. (2012) Distribution and abundance of large medusae in surface waters off the coasts of Washington and Oregon, USA: seasonal and interannual variability in relation to environmental conditions. Hydrobiologia 690:113-125. DOI 10.1007/s10750-012-1055-7

Takahashi, M. D.M. Checkley Jr., M.N.C. Litz, R.D. Brodeur, and W.T. Peterson. (2012) Responses in growth rate of larval northern anchovy to anomalous upwelling in the northern California Current. Fish. Oceanogr. 21(6): 393-404. DOI: 10.1111/j.1365-2419.2012.00633.x  

Ver Eecke, H.C., D.A. Butterfield, J.A. Huber, M.D. Lilley, E.J. Olson, K.K. Roe, L.J. Evans, A.Y. Merkel, H.V. Cantin, and J.F. Holden. 2012. Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents!. PNAS, 109(34):13674-13679. doi: 10.1073/pnas.1206632109

Weitkamp, L.A., Bentley, P., and Litz, M.N.C.  2012. Seasonal and interannual variation in juvenile salmon and associated fish assemblage in open waters of the lower Columbia River estuary. Fishery Bulletin 110(4): 426-450.  

Yu, H., Bi, H., Burke, B., Lamb, J., Peterson, W. (2012) Spatial variations in the distribution of yearling spring Chinook salmon off Washington and Oregon using COZIGAM analysis.  Mar Ecol Prog Ser 465: 253-265. doi: 10.3354/meps09909 

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