FY 2012 Fisheries
* CIMRS authors
FY 2012
Auth*, T.D. 2011. Analysis of the spring-fall epipelagic ichthyoplankton community in the northern California Current in 2004-2009 and its relation to environmental factors. CalCOFI Reports 52:148-167.
Auth*, T. D., R.D. Brodeur, H.L. Soulen*, L. Ciannelli, W.T. Peterson. 2011. The response of fish larvae to decadal changes in environmental forcing factors off the Oregon coast. Fisheries Oceanogr. 20(4): 314-328. DOI: 10.1111/j.1365-2419.2011.00586.x
Baldwin* R.E., M.A. Banks*, and K.C. Jacobson. 2012. Integrating fish and parasite data as a holistic solution for identifying the elusive stock structure of Pacific sardines (Sardinops sagax) Reviews in Fish Biology and Fisheries 22(1):137-156.
Baldwin*, R. E., M. Rew*, M.L. Johansson*, M. A. Banks*, K.C. Jacobson. 2011. Population structure of three species of Anisakis nematodes recovered from Pacific sardines (Sardinops sagax) distributed throughout the California Current System. J. Parasitology 97 (4): 545-554. DOI:10.1645/GE-2690.
Bjorkstedt, E., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, B. Peterson, B. Emmett, R. Brodeur, J. Peterson*, M. Litz*, J. Gomez-Valdez, G. Gaxiola-Castro, B. Lavaniegos, F. Chavez, C.A. Collins, J. Field, K. Sakuma, P. Warzybok, R. Bradley, J. Jahncke, S. Bograd, F. Schwing, G. S. Campbell, J. Hildebrand, W. Sydeman, S. A. Thompson, J. Largier, C. Halle, S. Y. Kim, J. Abell. State of the California Current 2010-2011: regionally variable response to a strong (but fleeting?) La Niña. CalCOFI Rep. 52:36-68
Black*, B. A., R.J. Allman, I.D. Schroeder, M.J. Schirripa, 2011. Multidecadal otolith! growth histories for red and gray snapper (Lutjanus spp.). Fish. Oceanogr. 20 (5): 347-356. DOI: 10.1111/j.1365-2419.2011.00588.x2011.
Claiborne, A., Fisher*, J.P., Hayes, S.A., Emmett, R. L. 2011. Size at release, size selective mortality, and age of maturity of Willamette River hatchery yearling Chinook salmon. Transactions of the American Fisheries Society 140(4):1135-1144. DOI:10.1080/00028487.2011.607050
Copeman*, L.A., A.W. Stoner, M.L. Ottmar, B. Daly, C.C. Parrish, and G.L. Eckert. 2012. Total lipids, lipid classes, and fatty acids of newly settled red king crab (Paralithodes camtschaticus): Comparison of hatchery-cultured and wild crabs. J. Shellfish Research, 31(1):153-165. DOI: 10.2983/035.031.0119
Daly*, E.A., R.D. Brodeur, J.P. Fisher*, L.A. Weitkamp., D.J. Teel, and B.R. Beckman. (2012) Spatial and trophic overlap of marked and unmarked Columbia River Basin spring Chinook salmon during early marine residence with implications for competition between hatchery and naturally produced fish. Env Biol Fishes94(1):117-134. DOI: 10.1007/s10641-011-9857-4
Du*, X., W. Peterson, and A. McCulloch*. 2011. An unusual bloom of the dinoflagellate Akashiwo sanguine off the central Oregon, USA, coast in autumn 2009. Harmful Algae 10(6). DOI:10.1016/j.hal.2011.06.011.
Gómez-Gutiérrez, J., M. C. Strüder-Kypke, D. H. Lynn, T. C. Shaw*, M. J. Aguilar-Méndez, A. López-Cortés, S. Martínez-Gómez, C. J. Robinson. 2012. Pseudocollinia brintoni gen. nov., sp. nov. (Apostomatida: Colliniidae), a parasitoid ciliate infecting the euphausiid Nyctiphanes simplex. Dis. Aquat. Org. 99:57-78. doi: 10.3354/dao02450.
Harvey, H.R., R.L. Pleuthner, E.J. Lessard, M.J. Bernhardt,, and C.T. Shaw*. 2012. Physical and biochemical properties of the euphausiids Thysanoessa inermis,Thysanoessa raschii, and Thysanoessa longipes in the eastern Bering Sea. Deep-Sea Res. II 65-70:173-183. doi:10.1016/j.dsr2.2012.02.007.
Jacobson K.C. and R.E. Baldwin* and D. Reese. 2012. Parasite communities indicate effects of cross-shelf distributions, but not mesoscale oceanographic features on northern California Current mid-trophic food web. Marine Ecology Progress Series 454:19-36. doi: 10.3354/meps09654
Johansson*, M., E. Duda*, A. Sremba*, M. Banks*, and W. Peterson. 2012. Assessing population-level variation in the mitochondrial genome of Euphausia superba using 454 next-generation sequencing. Molecular Biology Reports, 39(5): 5755-5760. DOI: 10.1007/s11033-011-1385-y.
Keister*, J. E. E. Di Lorenzo, C.A. Morgan*, V. Combes, W.T. Peterson. 2011. Zooplankton species composition is linked to ocean transport in the Northern California Current. Global Change Biology 17 (7): 2498-2511. DOI: 10.1111/j.1365-2486.2010.02383.x
Litz*, M., A.J., Phillips*, R.L. Emmett, and R. Brodeur. 2011. Seasonal occurrences of humboldt squid (Dosidicus gigas) in the Northern California current system.Calif. Coop. Oceanic Fish. Invest. Rep. 52: 97-108.
Pool*, Suzan S., D.C. Reese*, and R.D. Brodeur. 2012. Defining marine habitat of juvenile Chinook salmon, Oncorhynchus tshawytscha, and coho salmon, O. kisutch, in the northern California Current System. Environ. Biol. of Fishes, 93 (2):233-243. DOI: 10.1007/s10641-011-9909-9 FEB 2012.
Rupp*, D. E., T. C. Wainwright, P. W. Lawson, and W. T. Peterson. 2011. Marine environment-based forecasting of coho salmon (Oncorhynchus kisutch) adult recruitment. Fisheries Oceanography 21 (1):1-19. DOI: 10.1111/j.1365-2419.2011.00605.x2012.
Rupp*, D. E., T. C. Wainwright, and P. W. Lawson. 2012. Effect of forecast skill on management of the Oregon Coast coho salmon (Oncorhynchus kisutch) fishery.Canadian Journal of Fisheries and Aquatic Sciences 69:1016-1032. doi:10.1139/F2012-040
Ruzicka*, J. J., T. C. Wainwright, and W. T. Peterson. 2011. A model-based meso-zooplankton production index and its relation to the ocean survival of juvenile coho (Oncorhynchus kisutch). Fisheries Oceanography 20(6): 544-559. DOI: 10.1111/j.1365-2419.2011.00601.x
Steele, J. H. and J.J. Ruzicka*. 2011. Constructing end-to-end models using ECOPATH data. 2011. J. Marine Sys. 87 (3-4): 227-238. DOI: 10.1016/j.jmarsys.2011.04.005